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Letter to the Editor
Multiplex PCR assay for genotyping of Mycobacterium tuberculosis in Lima, Peru
PCR Múltiple para el Genotipaje de Mycobacterium tuberculosis en Lima, Perú
Carlos A. Telloa,
Corresponding author
carolusmagnum@gmail.com

Corresponding author.
, Nelly Borjaa, Ronnie G. Gavilanb, Ruth Garcia-de-la-Guardac
a Hospital Guillermo Almenara Irigoyen, Lima, Peru
b Instituto Nacional de Salud, Lima, Peru
c Universidad Nacional Mayor de San Marcos, Lima, Peru
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0&#46;2<span class="elsevierStyleHsp" style=""></span>mM of each deoxyribonucleotide triphosphate&#44; 10<span class="elsevierStyleHsp" style=""></span>mM Tris&#8211;HCl &#40;pH 8&#46;4&#41;&#44; 1&#46;65<span class="elsevierStyleHsp" style=""></span>mM MgCl<span class="elsevierStyleInf">2</span>&#44; 50<span class="elsevierStyleHsp" style=""></span>mM KCl&#44; and 0&#46;1&#37; Triton X-100 and overlaid with mineral oil&#46; Cycling conditions were as follows&#58; denaturation at 94<span class="elsevierStyleHsp" style=""></span>&#176;C for 5<span class="elsevierStyleHsp" style=""></span>min&#44; followed by amplification for 35 cycles of 94<span class="elsevierStyleHsp" style=""></span>&#176;C for 1<span class="elsevierStyleHsp" style=""></span>min&#44; 62<span class="elsevierStyleHsp" style=""></span>&#176;C for 1<span class="elsevierStyleHsp" style=""></span>min&#44; and 72<span class="elsevierStyleHsp" style=""></span>&#176;C for 1<span class="elsevierStyleHsp" style=""></span>min&#44; followed by a final extension at 72<span class="elsevierStyleHsp" style=""></span>&#176;C for 10<span class="elsevierStyleHsp" style=""></span>min&#46; A total of 20<span class="elsevierStyleHsp" style=""></span>&#956;l of amplified DNA was subjected to electrophoresis in a 2&#37; agarose gel&#44; detected by ethidium bromide staining&#44; and visualized under UV light&#46; For the genetic polymorphism study&#44; we used the Bionumerics program version 5&#46;0 &#40;Applied-Maths&#41;&#46;</p><p id="par0015" class="elsevierStylePara elsevierViewall">The drug resistance study showed that out of 49 strains belonging to TB patients in the Guillermo Almenara Irigoyen National Hospital&#44; 18 strains &#40;36&#46;74&#37;&#41; were drug-sensitive&#44; 10 &#40;20&#46;4&#37;&#41; were drug-resistant TB &#40;DR&#41; and 21 &#40;42&#46;8&#37;&#41; were multidrug-resistant TB &#40;MDR&#41;&#44; 3 of which were TB&#47;HIV cases&#46; Forty-two &#40;42&#41; different banding patterns were observed&#44; which were classified into 10 clusters &#40;<a class="elsevierStyleCrossRef" href="#fig0005">Fig&#46; 1</a>&#41;&#46; We suspect that cases MT009 and MT029 belong to heteroresistant strains&#44; i&#46;e&#46; mixed wild-type and mutant strains because the banding pattern seems to overlap<a class="elsevierStyleCrossRef" href="#bib0025"><span class="elsevierStyleSup">5</span></a>&#46;</p><elsevierMultimedia ident="fig0005"></elsevierMultimedia><p id="par0020" class="elsevierStylePara elsevierViewall">The transmission study showed Cluster II&#46; Two male patients with MDR-TB&#44; one of whom &#40;MT014&#41; had undergone previous MDR-TB treatment&#44; were both hospitalized&#59; Cluster IV&#46; Two male patients with TB&#47;HIV co-infection&#44; both residing in the same district&#59; Cluster VI&#46; Two male patients with TB&#47;HIV co-infection&#44; both living in the same district and receiving their treatment in the same hospital&#44; one of them &#40;MT048&#41; with DR TB and the other &#40;MT054&#41; with a sensitive case&#59; Cluster VIII&#46; Three male patients aged 44&#44; 34 and 28 years&#44; respectively&#44; two of whom were brothers &#40;MT033 and MT041&#41; and the other a neighbor &#40;MT032&#41;&#44; all of them sensitive cases&#46; The other clusters did not have an epidemiological link&#46; A statistical risk study was performed<a class="elsevierStyleCrossRefs" href="#bib0020"><span class="elsevierStyleSup">4&#44;13</span></a> and the result was that the patients with HIV infections had the highest contagion risk in our population &#40;<span class="elsevierStyleItalic">p</span><span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>0&#46;174&#59; OR<span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>3&#46;150&#59; CI<span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>0&#46;568&#8211;17&#46;477&#41;&#46; The repetition rate was good &#40;Cronbach&#39;s alpha<span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>0&#46;82&#41;&#46; This genotyping method could be an alternative for other PCR-based typing procedures&#44; such as spoligotyping and MIRU-VNTR typing as cited in other studies<a class="elsevierStyleCrossRef" href="#bib0035"><span class="elsevierStyleSup">7</span></a> and could help in the study of transmission relationship with heteroresistance&#44; HIV-TB patients and outbreaks&#46; Our TB survey system has many complications<a class="elsevierStyleCrossRefs" href="#bib0015"><span class="elsevierStyleSup">3&#44;9&#44;11</span></a> and the lack of surveillance in DOTS<a class="elsevierStyleCrossRef" href="#bib0015"><span class="elsevierStyleSup">3</span></a> results in patients having a great diversity of genotypes and drug-resistant profiles<a class="elsevierStyleCrossRefs" href="#bib0005"><span class="elsevierStyleSup">1&#44;5</span></a>&#44; as well as heteroresistance of wild type to resistant&#44; resistant to resistant&#44; and wild type to MDR strains<a class="elsevierStyleCrossRefs" href="#bib0005"><span class="elsevierStyleSup">1&#44;4&#44;8&#44;10&#44;12&#44;13</span></a>&#46; Our country needs a strategy based on epidemiology with molecular tools that will assist us in the analysis of the genetic diversity existing in Peru&#46;</p><span id="sec0005" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0005">Ethical disclosures</span><span id="sec0010" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0010">Protection of human and animal subjects</span><p id="par0025" class="elsevierStylePara elsevierViewall">The authors declare that no experiments were performed on humans or animals for this study&#46;</p></span><span id="sec0015" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0015">Confidentiality of data</span><p id="par0030" class="elsevierStylePara elsevierViewall">The authors declare that they have followed the protocols of their work center on the publication of patient data&#46;</p></span><span id="sec0020" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0020">Right to privacy and informed consent</span><p id="par0035" class="elsevierStylePara elsevierViewall">The authors declare that no patient data appear in this article&#46;</p></span></span><span id="sec0025" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0025">Funding</span><p id="par0040" class="elsevierStylePara elsevierViewall">Universidad Nacional Mayor de San Marcos&#58; CON-CON 2006 &#8211; Con asignaci&#243;n a la Investigaci&#243;n y con incentivo al investigador&#46;</p></span></span>"
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        "texto" => "<p id="par0045" class="elsevierStylePara elsevierViewall">The authors acknowledge to Dr&#46; Pablo Ramirez Roca and Dra&#46; Debora Alvarado Iparraguirre for the use of the Molecular Microbiology Laboratory &#40;Universidad Nacional Mayor de San Marcos&#44; Peru&#41;&#44; Dr&#46; Ernesto Montoro and Dr&#46; Raul Diaz of Instituto Pedro Kouri &#40;Cuba&#41; for the advice and review of this investigation&#46;</p>"
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es en pt

¿Es usted profesional sanitario apto para prescribir o dispensar medicamentos?

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Você é um profissional de saúde habilitado a prescrever ou dispensar medicamentos